I'm growing just a couple plants for head aches, sleep aid and of course the unavoidable recreation. I have a few concerns about my plants. I'm trying to grow them totally naturally and I recently (within the last week) have been seeing some concerns. Here are some photos of my plants. They are about 5 weeks old and have never been under any lights or anything. Organic fish fertilizer and rain water for these guys. Transplanted once then once again in the same size pots to get them deeper in the soil. The first time there wasn't much of a root system. The second time however I fear I hurt them a bit. Once I noticed the plants started to smell I also noticed some yellowing and holes in the leaves! I have brought them inside to try and isolate the problem. I thought it may have been bugs or a fungus or something. I do quite a lot of my own gardening (fruits veggies herbs and things) so Im also thinking maybe my other plants have spread something to them? I had been watering them twice a day so I thought they may have been getting too dry (its been hot where I live lately) so I put them in about half an inch of water in a basin. Could I rot the roots doing this?