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If it was lack of light the plant would just either stretch to try to get more light and just grow tall and lanky, or it just wouldn't have sufficient light and wouldn't grow, it would affect the entire plant not just a few leaves. Try transplanting them into something bigger, a good rule of thumb I like to follow is, when they are in the seedling stage and in solo cups, transplant them when they are about the same height as the cup. 5 inches is right around the size of a solo cup so if it's plausible try that, and see what happens.
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